OBO Foundry dashboard analysis¶

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/tmp/ipykernel_839/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    5
unknown           2
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 5 16033.285714 29343.285238 0.0 937.5 5354.0 11796.5 81411.0
Declaration 5 3096.000000 6160.655512 0.0 243.5 1220.0 1489.5 16986.0
SubClassOf 5 3151.571429 6128.800722 0.0 311.5 1141.0 1668.5 16960.0
ObjectPropertyDomain 3 22.000000 36.060135 0.0 0.0 0.0 31.5 91.0
SubObjectPropertyOf 3 26.714286 43.307868 0.0 0.0 0.0 48.5 90.0
ObjectPropertyRange 3 20.142857 33.577912 0.0 0.0 0.0 27.0 87.0
SubAnnotationPropertyOf 3 3.857143 7.151423 0.0 0.0 0.0 4.0 19.0
DisjointClasses 3 12.285714 16.799943 0.0 0.0 0.0 22.0 42.0
TransitiveObjectProperty 2 2.285714 3.946065 0.0 0.0 0.0 3.5 9.0
ClassAssertion 2 3.000000 7.094599 0.0 0.0 0.0 1.0 19.0
SymmetricObjectProperty 2 1.000000 2.236068 0.0 0.0 0.0 0.5 6.0
DataPropertyRange 2 3.571429 9.015859 0.0 0.0 0.0 0.5 24.0
EquivalentClasses 2 3.714286 7.521398 0.0 0.0 0.0 3.0 20.0
EquivalentObjectProperties 2 2.857143 6.335839 0.0 0.0 0.0 1.5 17.0
FunctionalObjectProperty 2 1.428571 2.507133 0.0 0.0 0.0 2.0 6.0
InverseObjectProperties 2 8.571429 14.819550 0.0 0.0 0.0 13.0 34.0
IrrefexiveObjectProperty 2 0.714286 1.496026 0.0 0.0 0.0 0.5 4.0
SubDataPropertyOf 1 1.571429 4.157609 0.0 0.0 0.0 0.0 11.0
AsymmetricObjectProperty 1 0.857143 2.267787 0.0 0.0 0.0 0.0 6.0
SubPropertyChainOf 1 2.142857 5.669467 0.0 0.0 0.0 0.0 15.0
FunctionalDataProperty 1 0.857143 2.267787 0.0 0.0 0.0 0.0 6.0
ObjectPropertyAssertion 1 0.285714 0.755929 0.0 0.0 0.0 0.0 2.0
DifferentIndividuals 1 0.285714 0.755929 0.0 0.0 0.0 0.0 2.0
DataPropertyDomain 1 1.571429 4.157609 0.0 0.0 0.0 0.0 11.0
AnnotationPropertyRangeOf 1 0.428571 1.133893 0.0 0.0 0.0 0.0 3.0
AnnotationPropertyDomain 1 0.142857 0.377964 0.0 0.0 0.0 0.0 1.0
InverseFunctionalObjectProperty 1 0.285714 0.755929 0.0 0.0 0.0 0.0 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 5 9390.142857 18411.981845 0.0 866.5 3405.0 4853.0 50887.0
ObjectAllValuesFrom 3 6.000000 10.598742 0.0 0.0 0.0 6.5 29.0
ObjectSomeValuesFrom 3 126.714286 240.742403 0.0 0.0 0.0 115.5 656.0
ObjectUnionOf 3 7.571429 15.533374 0.0 0.0 0.0 5.5 42.0
DataSomeValuesFrom 2 3.857143 9.771192 0.0 0.0 0.0 0.5 26.0
ObjectComplementOf 2 4.857143 11.186727 0.0 0.0 0.0 2.0 30.0
ObjectExactCardinality 2 0.285714 0.487950 0.0 0.0 0.0 0.5 1.0
ObjectIntersectionOf 2 7.428571 13.151136 0.0 0.0 0.0 10.0 32.0
ObjectMinCardinality 2 1.000000 2.236068 0.0 0.0 0.0 0.5 6.0
DataExactCardinality 1 0.857143 2.267787 0.0 0.0 0.0 0.0 6.0
DataMinCardinality 1 0.142857 0.377964 0.0 0.0 0.0 0.0 1.0
ObjectMaxCardinality 1 0.142857 0.377964 0.0 0.0 0.0 0.0 1.0
ObjectOneOf 1 0.428571 1.133893 0.0 0.0 0.0 0.0 3.0

OBO Score (Experimental)

ontology score score_dash score_impact
5 t4fs 0.419 0.838 0.0
6 vbo 0.411 0.822 0.0
2 mcro 0.386 0.771 0.0
1 bpdo 0.363 0.727 0.0
3 ngbo 0.219 0.438 0.0
0 ado 0.000 0.000 0.0
4 scho 0.000 0.000 0.0

OBO Score Summary

count mean std min 25% 50% 75% max
score 7.0 0.256857 0.187696 0.0 0.1095 0.363 0.3985 0.419
score_dash 7.0 0.513714 0.375372 0.0 0.2190 0.727 0.7965 0.838
score_impact 7.0 0.000000 0.000000 0.0 0.0000 0.000 0.0000 0.000

OBO dependency graph